IL_9BS0_040

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

9BS0|1|A|G|1288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BS0_040 not in the Motif Atlas

Homologous match to IL_4WF9_044

Geometric discrepancy: 0.134

The information below is about IL_4WF9_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.4

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

21

Unit IDs

9BS0|1|A|C|1237
9BS0|1|A|G|1238
9BS0|1|A|U|1239
*
9BS0|1|A|A|1287
9BS0|1|A|G|1288
9BS0|1|A|U|1289
9BS0|1|A|G|1290

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain I

Large ribosomal subunit protein uL15

Chain L

Large ribosomal subunit protein bL20