IL_9BS0_043

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAC*GAC

Length

6 nucleotides

Bulged bases

9BS0|1|A|A|1260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BS0_043 not in the Motif Atlas

Homologous match to IL_4WF9_047

Geometric discrepancy: 0.1991

The information below is about IL_4WF9_047

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

9BS0|1|A|G|1259
9BS0|1|A|A|1260
9BS0|1|A|C|1261
*
9BS0|1|A|G|1268
9BS0|1|A|A|1269
9BS0|1|A|C|1270

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

Large ribosomal subunit protein bL20

Chain M

Large ribosomal subunit protein bL21