IL_9BS0_046

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAAG*CGC

Length

8 nucleotides

Bulged bases

9BS0|1|A|G|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BS0_046 not in the Motif Atlas

Homologous match to IL_7A0S_047

Geometric discrepancy: 0.2248

The information below is about IL_7A0S_047

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

11

Unit IDs

9BS0|1|A|G|1358
9BS0|1|A|G|1359
9BS0|1|A|A|1360
9BS0|1|A|A|1361
9BS0|1|A|G|1362
*
9BS0|1|A|C|1370
9BS0|1|A|G|1371
9BS0|1|A|C|1372

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

Large ribosomal subunit protein uL22