IL_9BS0_048

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BS0_048 not in the Motif Atlas

Homologous match to IL_5J7L_293

Geometric discrepancy: 0.1558

The information below is about IL_5J7L_293

Detailed Annotation

tSH-tWH-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

9BS0|1|A|C|1396
9BS0|1|A|G|1397
9BS0|1|A|A|1398
9BS0|1|A|G|1399
9BS0|1|A|G|1400
*
9BS0|1|A|C|1409
9BS0|1|A|G|1410
9BS0|1|A|U|1411
9BS0|1|A|A|1412
9BS0|1|A|G|1413

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2

Chain U

Large ribosomal subunit protein bL34