IL_9BS0_057

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUG*CAUAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BS0_057 not in the Motif Atlas

Homologous match to IL_9DFE_060

Geometric discrepancy: 0.5298

The information below is about IL_9DFE_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_46086.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

1

Unit IDs

9BS0|1|A|C|1527
9BS0|1|A|U|1528
9BS0|1|A|G|1529
*
9BS0|1|A|C|1552
9BS0|1|A|A|1553
9BS0|1|A|U|1554
9BS0|1|A|A|1555
9BS0|1|A|A|1556
9BS0|1|A|G|1557

Current chains

Chain A

23S rRNA

Nearby chains