IL_9BS0_061

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UAA*UCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BS0_061 not in the Motif Atlas

Homologous match to IL_4WF9_063

Geometric discrepancy: 0.1699

The information below is about IL_4WF9_063

Detailed Annotation

Isolated tWW turn

Broad Annotation

No text annotation

Motif group

IL_10432.2

Basepair signature

cWW-tWW-cWW

Number of instances in this motif group

11

Unit IDs

9BS0|1|A|U|1708
9BS0|1|A|A|1709
9BS0|1|A|A|1710
*
9BS0|1|A|U|2024
9BS0|1|A|C|2025
9BS0|1|A|A|2026

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain H

Large ribosomal subunit protein uL14

Chain K

Large ribosomal subunit protein bL19