IL_9BS0_066

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGUUAG*CGAGA

Length

11 nucleotides

Bulged bases

9BS0|1|A|U|1758

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BS0_066 not in the Motif Atlas

Geometric match to IL_5J7L_022

Geometric discrepancy: 0.3562

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9BS0|1|A|U|1756
9BS0|1|A|G|1757
9BS0|1|A|U|1758
9BS0|1|A|U|1759
9BS0|1|A|A|1760
9BS0|1|A|G|1761
*
9BS0|1|A|C|1772
9BS0|1|A|G|1773
9BS0|1|A|A|1774
9BS0|1|A|G|1775
9BS0|1|A|A|1776

Current chains

Chain A

23S rRNA

Nearby chains