IL_9BS0_067

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GC*GAU

Length

5 nucleotides

Bulged bases

9BS0|1|A|A|2010

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BS0_067 not in the Motif Atlas

Homologous match to IL_5J7L_312

Geometric discrepancy: 0.5575

The information below is about IL_5J7L_312

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

9BS0|1|A|G|1799
9BS0|1|A|C|1800
*
9BS0|1|A|G|2009
9BS0|1|A|A|2010
9BS0|1|A|U|2011

Current chains

Chain A

23S rRNA

Nearby chains