IL_9BS0_073

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

9BS0|1|A|A|2468, 9BS0|1|A|C|2469

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BS0_073 not in the Motif Atlas

Homologous match to IL_4WF9_081

Geometric discrepancy: 0.3925

The information below is about IL_4WF9_081

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

68

Unit IDs

9BS0|1|A|G|2099
9BS0|1|A|A|2100
*
9BS0|1|A|U|2467
9BS0|1|A|A|2468
9BS0|1|A|C|2469
9BS0|1|A|C|2470

Current chains

Chain A

23S rRNA

Nearby chains