IL_9BS0_093

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGGAAG*UGGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BS0_093 not in the Motif Atlas

Homologous match to IL_4WF9_108

Geometric discrepancy: 0.1392

The information below is about IL_4WF9_108

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_48489.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

9

Unit IDs

9BS0|1|A|U|2872
9BS0|1|A|G|2873
9BS0|1|A|G|2874
9BS0|1|A|A|2875
9BS0|1|A|A|2876
9BS0|1|A|G|2877
*
9BS0|1|A|U|2890
9BS0|1|A|G|2891
9BS0|1|A|G|2892
9BS0|1|A|A|2893
9BS0|1|A|G|2894

Current chains

Chain A

23S rRNA

Nearby chains

Chain J

Large ribosomal subunit protein bL17

Chain K

Large ribosomal subunit protein bL19