IL_9BSS_018

3D structure

PDB id

9BSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

45SRbgA particle in complex with RbgA and YphC. Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAAG*CGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BSS_018 not in the Motif Atlas

Homologous match to IL_9DFE_014

Geometric discrepancy: 0.239

The information below is about IL_9DFE_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66798.3

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

7

Unit IDs

9BSS|1|A|U|650
9BSS|1|A|U|651
9BSS|1|A|A|652
9BSS|1|A|A|653
9BSS|1|A|G|654
*
9BSS|1|A|C|664
9BSS|1|A|G|665
9BSS|1|A|G|666
9BSS|1|A|A|667
9BSS|1|A|G|668

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain I

Large ribosomal subunit protein uL15