IL_9BSS_033
3D structure
- PDB id
- 9BSS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 45SRbgA particle in complex with RbgA and YphC. Class B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UCCCAAAG*CA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BSS_033 not in the Motif Atlas
- Homologous match to IL_4WF9_037
- Geometric discrepancy: 0.1128
- The information below is about IL_4WF9_037
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_46868.2
- Basepair signature
- cWW-L-cWW-L-L-R-L-R
- Number of instances in this motif group
- 5
Unit IDs
9BSS|1|A|U|1050
9BSS|1|A|C|1051
9BSS|1|A|C|1052
9BSS|1|A|C|1053
9BSS|1|A|A|1054
9BSS|1|A|A|1055
9BSS|1|A|A|1056
9BSS|1|A|G|1057
*
9BSS|1|A|C|1196
9BSS|1|A|A|1197
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain G
- Large ribosomal subunit protein uL13
- Chain L
- Large ribosomal subunit protein bL20
Coloring options: