IL_9BSS_035

3D structure

PDB id

9BSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

45SRbgA particle in complex with RbgA and YphC. Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

9BSS|1|A|A|1189

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BSS_035 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.1574

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

9BSS|1|A|U|1064
9BSS|1|A|U|1065
9BSS|1|A|A|1066
9BSS|1|A|A|1067
9BSS|1|A|G|1068
9BSS|1|A|U|1069
9BSS|1|A|G|1070
*
9BSS|1|A|C|1186
9BSS|1|A|U|1187
9BSS|1|A|A|1188
9BSS|1|A|A|1189
9BSS|1|A|A|1190

Current chains

Chain A

23S rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain F

Large ribosomal subunit protein uL6

Chain G

Large ribosomal subunit protein uL13