IL_9BSS_045

3D structure

PDB id

9BSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

45SRbgA particle in complex with RbgA and YphC. Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BSS_045 not in the Motif Atlas

Homologous match to IL_5J7L_293

Geometric discrepancy: 0.1241

The information below is about IL_5J7L_293

Detailed Annotation

tSH-tWH-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

9BSS|1|A|C|1396
9BSS|1|A|G|1397
9BSS|1|A|A|1398
9BSS|1|A|G|1399
9BSS|1|A|G|1400
*
9BSS|1|A|C|1409
9BSS|1|A|G|1410
9BSS|1|A|U|1411
9BSS|1|A|A|1412
9BSS|1|A|G|1413

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2

Chain U

Large ribosomal subunit protein bL34