IL_9BSS_052

3D structure

PDB id

9BSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

45SRbgA particle in complex with RbgA and YphC. Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUA*UUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BSS_052 not in the Motif Atlas

Geometric match to IL_5MWI_003

Geometric discrepancy: 0.1376

The information below is about IL_5MWI_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

9BSS|1|A|G|1488
9BSS|1|A|U|1489
9BSS|1|A|A|1490
*
9BSS|1|A|U|1595
9BSS|1|A|U|1596
9BSS|1|A|C|1597

Current chains

Chain A

23S rRNA

Nearby chains