IL_9BSS_060

3D structure

PDB id

9BSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

45SRbgA particle in complex with RbgA and YphC. Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAACUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BSS_060 not in the Motif Atlas

Geometric match to IL_4WF9_117

Geometric discrepancy: 0.1426

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.3

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

11

Unit IDs

9BSS|1|A|G|1711
9BSS|1|A|G|1712
9BSS|1|A|A|1713
9BSS|1|A|A|1714
9BSS|1|A|C|1715
9BSS|1|A|U|1716
9BSS|1|A|C|1717
9BSS|1|A|G|1718
9BSS|1|A|G|1719
*
9BSS|1|A|C|2019
9BSS|1|A|U|2020
9BSS|1|A|G|2021
9BSS|1|A|U|2022
9BSS|1|A|C|2023

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain H

Large ribosomal subunit protein uL14