IL_9BSS_084

3D structure

PDB id

9BSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

45SRbgA particle in complex with RbgA and YphC. Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCGCU*AUG

Length

8 nucleotides

Bulged bases

9BSS|1|A|U|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BSS_084 not in the Motif Atlas

Homologous match to IL_4WF9_101

Geometric discrepancy: 0.131

The information below is about IL_4WF9_101

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.14

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

9BSS|1|A|C|2709
9BSS|1|A|C|2710
9BSS|1|A|G|2711
9BSS|1|A|C|2712
9BSS|1|A|U|2713
*
9BSS|1|A|A|2754
9BSS|1|A|U|2755
9BSS|1|A|G|2756

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain H

Large ribosomal subunit protein uL14

Chain K

Large ribosomal subunit protein bL19