IL_9BSS_090

3D structure

PDB id

9BSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

45SRbgA particle in complex with RbgA and YphC. Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGGAAG*UGGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BSS_090 not in the Motif Atlas

Homologous match to IL_4WF9_108

Geometric discrepancy: 0.1133

The information below is about IL_4WF9_108

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_48489.3

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

9

Unit IDs

9BSS|1|A|U|2872
9BSS|1|A|G|2873
9BSS|1|A|G|2874
9BSS|1|A|A|2875
9BSS|1|A|A|2876
9BSS|1|A|G|2877
*
9BSS|1|A|U|2890
9BSS|1|A|G|2891
9BSS|1|A|G|2892
9BSS|1|A|A|2893
9BSS|1|A|G|2894

Current chains

Chain A

23S rRNA

Nearby chains

Chain J

Large ribosomal subunit protein bL17

Chain K

Large ribosomal subunit protein bL19