IL_9C8K_007

3D structure

PDB id

9C8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUAUGGUUCCUUU*AUUCGAACGUC

Length

25 nucleotides

Bulged bases

9C8K|1|1|G|113

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9C8K|1|1|G|108
9C8K|1|1|U|109
9C8K|1|1|U|110
9C8K|1|1|A|111
9C8K|1|1|U|112
9C8K|1|1|G|113
9C8K|1|1|G|114
9C8K|1|1|U|115
9C8K|1|1|U|116
9C8K|1|1|C|117
9C8K|1|1|C|118
9C8K|1|1|U|119
9C8K|1|1|U|120
9C8K|1|1|U|121
*
9C8K|1|1|A|343
9C8K|1|1|U|344
9C8K|1|1|U|345
9C8K|1|1|C|346
9C8K|1|1|G|347
9C8K|1|1|A|348
9C8K|1|1|A|349
9C8K|1|1|C|350
9C8K|1|1|G|351
9C8K|1|1|U|352
9C8K|1|1|C|353

Current chains

Chain 1

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein eS4

Chain I

eS8

Chain L

uS17