IL_9C8K_008
3D structure
- PDB id
- 9C8K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAUAAC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 9C8K|1|1|U|172
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9C8K_008 not in the Motif Atlas
- Homologous match to IL_8P9A_383
- Geometric discrepancy: 0.3327
- The information below is about IL_8P9A_383
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_24485.1
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-tHW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9C8K|1|1|G|145
9C8K|1|1|G|146
9C8K|1|1|A|147
9C8K|1|1|U|148
9C8K|1|1|A|149
9C8K|1|1|A|150
9C8K|1|1|C|151
*
9C8K|1|1|G|167
9C8K|1|1|C|168
9C8K|1|1|U|169
9C8K|1|1|A|170
9C8K|1|1|A|171
9C8K|1|1|U|172
9C8K|1|1|A|173
9C8K|1|1|C|174
Current chains
- Chain 1
- 18S ribosomal RNA
Nearby chains
- Chain G
- eS6
- Chain Y
- Small ribosomal subunit protein eS24
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