IL_9C8K_009

3D structure

PDB id

9C8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C8K_009 not in the Motif Atlas

Geometric match to IL_5J7L_274

Geometric discrepancy: 0.2244

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

9C8K|1|1|C|188
9C8K|1|1|U|189
9C8K|1|1|G|190
9C8K|1|1|A|191
9C8K|1|1|C|192
*
9C8K|1|1|G|207
9C8K|1|1|G|208
9C8K|1|1|A|209
9C8K|1|1|U|210
9C8K|1|1|G|211

Current chains

Chain 1

18S ribosomal RNA

Nearby chains

Chain I

eS8