IL_9C8K_026

3D structure

PDB id

9C8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

9C8K|1|1|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C8K_026 not in the Motif Atlas

Homologous match to IL_8C3A_426

Geometric discrepancy: 0.208

The information below is about IL_8C3A_426

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.4

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

9C8K|1|1|G|665
9C8K|1|1|U|666
9C8K|1|1|U|667
9C8K|1|1|A|668
9C8K|1|1|A|669
9C8K|1|1|A|670
9C8K|1|1|A|671
*
9C8K|1|1|U|1161
9C8K|1|1|C|1162

Current chains

Chain 1

18S ribosomal RNA

Nearby chains

Chain X

uS12

Chain a

40S ribosomal protein S26