IL_9C8K_034

3D structure

PDB id

9C8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAGUGUUCAAAGCAG*CUGGAU

Length

22 nucleotides

Bulged bases

9C8K|1|1|G|821, 9C8K|1|1|U|823

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9C8K|1|1|A|816
9C8K|1|1|G|817
9C8K|1|1|A|818
9C8K|1|1|G|819
9C8K|1|1|U|820
9C8K|1|1|G|821
9C8K|1|1|U|822
9C8K|1|1|U|823
9C8K|1|1|C|824
9C8K|1|1|A|825
9C8K|1|1|A|826
9C8K|1|1|A|827
9C8K|1|1|G|828
9C8K|1|1|C|829
9C8K|1|1|A|830
9C8K|1|1|G|831
*
9C8K|1|1|C|843
9C8K|1|1|U|844
9C8K|1|1|G|845
9C8K|1|1|G|846
9C8K|1|1|A|847
9C8K|1|1|U|848

Current chains

Chain 1

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein eS4

Chain J

uS4

Chain Y

Small ribosomal subunit protein eS24