IL_9C8K_049

3D structure

PDB id

9C8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGACAGGAUUG*CUCGAUUCCG

Length

22 nucleotides

Bulged bases

9C8K|1|1|A|1284, 9C8K|1|1|G|1285, 9C8K|1|1|G|1286, 9C8K|1|1|A|1287, 9C8K|1|1|A|1313, 9C8K|1|1|U|1314

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9C8K|1|1|C|1279
9C8K|1|1|G|1280
9C8K|1|1|G|1281
9C8K|1|1|A|1282
9C8K|1|1|C|1283
9C8K|1|1|A|1284
9C8K|1|1|G|1285
9C8K|1|1|G|1286
9C8K|1|1|A|1287
9C8K|1|1|U|1288
9C8K|1|1|U|1289
9C8K|1|1|G|1290
*
9C8K|1|1|C|1309
9C8K|1|1|U|1310
9C8K|1|1|C|1311
9C8K|1|1|G|1312
9C8K|1|1|A|1313
9C8K|1|1|U|1314
9C8K|1|1|U|1315
9C8K|1|1|C|1316
9C8K|1|1|C|1317
9C8K|1|1|G|1318

Current chains

Chain 1

18S ribosomal RNA

Nearby chains

Chain K

S10_plectin domain-containing protein

Chain M

eS12

Chain d

uS14

Chain f

eS31