IL_9C8K_053

3D structure

PDB id

9C8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGCAUGG*UCUGUGAUGC

Length

18 nucleotides

Bulged bases

9C8K|1|1|C|1331, 9C8K|1|1|U|1494, 9C8K|1|1|G|1497

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9C8K|1|1|G|1328
9C8K|1|1|U|1329
9C8K|1|1|G|1330
9C8K|1|1|C|1331
9C8K|1|1|A|1332
9C8K|1|1|U|1333
9C8K|1|1|G|1334
9C8K|1|1|G|1335
*
9C8K|1|1|U|1492
9C8K|1|1|C|1493
9C8K|1|1|U|1494
9C8K|1|1|G|1495
9C8K|1|1|U|1496
9C8K|1|1|G|1497
9C8K|1|1|A|1498
9C8K|1|1|U|1499
9C8K|1|1|G|1500
9C8K|1|1|C|1501

Current chains

Chain 1

18S ribosomal RNA

Nearby chains

Chain D

40S ribosomal protein uS3

Chain K

S10_plectin domain-containing protein

Chain U

uS10

Chain d

uS14

Chain f

eS31