IL_9C8K_055

3D structure

PDB id

9C8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

9C8K|1|1|A|1489

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C8K_055 not in the Motif Atlas

Homologous match to IL_8C3A_458

Geometric discrepancy: 0.2422

The information below is about IL_8C3A_458

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

112

Unit IDs

9C8K|1|1|C|1337
9C8K|1|1|G|1338
*
9C8K|1|1|C|1488
9C8K|1|1|A|1489
9C8K|1|1|G|1490

Current chains

Chain 1

18S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein uS5

Chain D

40S ribosomal protein uS3

Chain U

uS10

Chain d

uS14