IL_9C8K_060

3D structure

PDB id

9C8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACUAG*CUUCU

Length

10 nucleotides

Bulged bases

9C8K|1|1|C|1403, 9C8K|1|1|U|1404

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C8K_060 not in the Motif Atlas

Homologous match to IL_8CRE_459

Geometric discrepancy: 0.2472

The information below is about IL_8CRE_459

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9C8K|1|1|A|1402
9C8K|1|1|C|1403
9C8K|1|1|U|1404
9C8K|1|1|A|1405
9C8K|1|1|G|1406
*
9C8K|1|1|C|1440
9C8K|1|1|U|1441
9C8K|1|1|U|1442
9C8K|1|1|C|1443
9C8K|1|1|U|1444

Current chains

Chain 1

18S ribosomal RNA

Nearby chains

Chain D

40S ribosomal protein uS3

Chain Q

uS9

Chain U

uS10