IL_9C8K_066

3D structure

PDB id

9C8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

9C8K|1|1|C|1701, 9C8K|1|1|A|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C8K_066 not in the Motif Atlas

Homologous match to IL_8P9A_452

Geometric discrepancy: 0.3265

The information below is about IL_8P9A_452

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18228.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

9C8K|1|1|C|1700
9C8K|1|1|C|1701
9C8K|1|1|G|1702
*
9C8K|1|1|C|1833
9C8K|1|1|A|1834
9C8K|1|1|A|1835
9C8K|1|1|G|1836

Current chains

Chain 1

18S ribosomal RNA

Nearby chains

Chain a

40S ribosomal protein S26