IL_9CFN_002

3D structure

PDB id

9CFN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of an exoribonuclease-resistant RNA from a Tombusvirus-like associated RNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

9CFN|1|A|A|31

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9CFN_002 not in the Motif Atlas

Geometric match to IL_8UIW_001

Geometric discrepancy: 0.2377

The information below is about IL_8UIW_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

9CFN|1|A|C|10
9CFN|1|A|C|11
*
9CFN|1|A|G|30
9CFN|1|A|A|31
9CFN|1|A|G|32

Current chains

Chain A

RNA (59-MER)

Nearby chains