IL_9CG5_073

3D structure

PDB id

9CG5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1 + UUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9CG5_073 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.4056

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

9CG5|1|a|C|274
9CG5|1|a|C|275
9CG5|1|a|U|276
9CG5|1|a|G|277
9CG5|1|a|A|278
9CG5|1|a|A|279
9CG5|1|a|U|280
9CG5|1|a|C|281
*
9CG5|1|a|G|359
9CG5|1|a|U|360
9CG5|1|a|G|361
9CG5|1|a|A|362
9CG5|1|a|G|363

Current chains

Chain a

23S ribosomal RNA

Nearby chains