IL_9CG6_019

3D structure

PDB id

9CG6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1 + GUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9CG6_019 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.0969

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

9CG6|1|A|U|409
9CG6|1|A|G|410
9CG6|1|A|A|411
9CG6|1|A|A|412
9CG6|1|A|G|413
9CG6|1|A|A|414
9CG6|1|A|A|415
9CG6|1|A|G|416
*
9CG6|1|A|U|427
9CG6|1|A|G|428
9CG6|1|A|U|429
9CG6|1|A|A|430
9CG6|1|A|A|431
9CG6|1|A|A|432
9CG6|1|A|G|433

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

30S ribosomal protein S4