IL_9CG6_073

3D structure

PDB id

9CG6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1 + GUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9CG6_073 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.4128

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

9CG6|1|a|C|274
9CG6|1|a|C|275
9CG6|1|a|U|276
9CG6|1|a|G|277
9CG6|1|a|A|278
9CG6|1|a|A|279
9CG6|1|a|U|280
9CG6|1|a|C|281
*
9CG6|1|a|G|359
9CG6|1|a|U|360
9CG6|1|a|G|361
9CG6|1|a|A|362
9CG6|1|a|G|363

Current chains

Chain a

23S ribosomal RNA

Nearby chains