IL_9CG7_080

3D structure

PDB id

9CG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1 + AUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

9CG7|1|a|G|801, 9CG7|1|a|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9CG7_080 not in the Motif Atlas

Homologous match to IL_9DFE_016

Geometric discrepancy: 0.0868

The information below is about IL_9DFE_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

9CG7|1|a|G|674
9CG7|1|a|A|675
9CG7|1|a|A|676
9CG7|1|a|A|677
9CG7|1|a|C|678
*
9CG7|1|a|G|799
9CG7|1|a|A|800
9CG7|1|a|G|801
9CG7|1|a|A|802
9CG7|1|a|U|803
9CG7|1|a|A|804
9CG7|1|a|G|805
9CG7|1|a|C|806

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain k

50S ribosomal protein L15