IL_9CG7_094

3D structure

PDB id

9CG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1 + AUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9CG7_094 not in the Motif Atlas

Homologous match to IL_5J7L_274

Geometric discrepancy: 0.183

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

9CG7|1|a|G|875
9CG7|1|a|C|876
9CG7|1|a|A|877
9CG7|1|a|A|878
9CG7|1|a|G|879
*
9CG7|1|a|C|898
9CG7|1|a|A|899
9CG7|1|a|A|900
9CG7|1|a|C|901
9CG7|1|a|C|902

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain l

50S ribosomal protein L16