IL_9CGU_004
3D structure
- PDB id
- 9CGU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cas9 ternary complex, 14-nt sgRNA, State II (kinked)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AGAGC*GCAAGUU
- Length
- 12 nucleotides
- Bulged bases
- 9CGU|1|B|A|28, 9CGU|1|B|U|44
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9CGU_004 not in the Motif Atlas
- Homologous match to IL_8KAL_002
- Geometric discrepancy: 0.2215
- The information below is about IL_8KAL_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_84029.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
9CGU|1|B|A|26
9CGU|1|B|G|27
9CGU|1|B|A|28
9CGU|1|B|G|29
9CGU|1|B|C|30
*
9CGU|1|B|G|39
9CGU|1|B|C|40
9CGU|1|B|A|41
9CGU|1|B|A|42
9CGU|1|B|G|43
9CGU|1|B|U|44
9CGU|1|B|U|45
Current chains
- Chain B
- sgRNA
Nearby chains
- Chain A
- CRISPR-associated endonuclease Cas9/Csn1
Coloring options: