IL_9CGU_006

3D structure

PDB id

9CGU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cas9 ternary complex, 14-nt sgRNA, State II (kinked)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CTAATC*GATTAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CTAATC,GATTAG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9CGU|1|C|DC|1
9CGU|1|C|DT|2
9CGU|1|C|DA|3
9CGU|1|C|DA|4
9CGU|1|C|DT|5
9CGU|1|C|DC|6
*
9CGU|1|D|DG|35
9CGU|1|D|DA|36
9CGU|1|D|DT|37
9CGU|1|D|DT|38
9CGU|1|D|DA|39
9CGU|1|D|DG|40

Current chains

Chain C

Target strand

Chain D

Non-target strand

Nearby chains

Chain A

CRISPR-associated endonuclease Cas9/Csn1