IL_9CN3_033

3D structure

PDB id

9CN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 39S mitoribosome in complex with antibiotic Linezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

UG*UUAA

Length

6 nucleotides

Bulged bases

9CN3|1|A|U|2563, 9CN3|1|A|A|2564

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9CN3_033 not in the Motif Atlas

Homologous match to IL_5J7L_315

Geometric discrepancy: 0.1658

The information below is about IL_5J7L_315

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

9CN3|1|A|U|2552
9CN3|1|A|G|2553
*
9CN3|1|A|U|2562
9CN3|1|A|U|2563
9CN3|1|A|A|2564
9CN3|1|A|A|2565

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

39S ribosomal protein L2, mitochondrial