IL_9CN3_055

3D structure

PDB id

9CN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 39S mitoribosome in complex with antibiotic Linezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CCCUGUAC*GGACAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9CN3_055 not in the Motif Atlas

Geometric match to IL_8P9A_344

Geometric discrepancy: 0.1982

The information below is about IL_8P9A_344

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

9CN3|1|A|C|3119
9CN3|1|A|C|3120
9CN3|1|A|C|3121
9CN3|1|A|U|3122
9CN3|1|A|G|3123
9CN3|1|A|U|3124
9CN3|1|A|A|3125
9CN3|1|A|C|3126
*
9CN3|1|A|G|3131
9CN3|1|A|G|3132
9CN3|1|A|A|3133
9CN3|1|A|C|3134
9CN3|1|A|A|3135
9CN3|1|A|A|3136
9CN3|1|A|G|3137

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

39S ribosomal protein L14, mitochondrial