IL_9D0I_012
3D structure
- PDB id
- 9D0I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Se-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.45 Å
Loop
- Sequence
- GAAC*GAGUGAAAUAGAGC
- Length
- 18 nucleotides
- Bulged bases
- 9D0I|1|1A|U|504, 9D0I|1|1A|G|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9D0I_012 not in the Motif Atlas
- Geometric match to IL_9DFE_012
- Geometric discrepancy: 0.0544
- The information below is about IL_9DFE_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44923.1
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 9
Unit IDs
9D0I|1|1A|G|481
9D0I|1|1A|A|482
9D0I|1|1A|A|483
9D0I|1|1A|C|484
*
9D0I|1|1A|G|496
9D0I|1|1A|A|497
9D0I|1|1A|G|498
9D0I|1|1A|U|499
9D0I|1|1A|G|500
9D0I|1|1A|A|501
9D0I|1|1A|A|502
9D0I|1|1A|A|503
9D0I|1|1A|U|504
9D0I|1|1A|A|505
9D0I|1|1A|G|506
9D0I|1|1A|A|507
9D0I|1|1A|G|508
9D0I|1|1A|C|509
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1W
- 50S ribosomal protein L22
- Chain 1Y
- 50S ribosomal protein L24
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