IL_9D0I_055

3D structure

PDB id

9D0I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Se-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

AGAAG*UGGU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D0I_055 not in the Motif Atlas

Geometric match to IL_9DFE_059

Geometric discrepancy: 0.0878

The information below is about IL_9DFE_059

Detailed Annotation

UAA/GAN variation

Broad Annotation

No text annotation

Motif group

IL_45790.2

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

12

Unit IDs

9D0I|1|1A|A|1469
9D0I|1|1A|G|1470
9D0I|1|1A|A|1471
9D0I|1|1A|A|1472
9D0I|1|1A|G|1473
*
9D0I|1|1A|U|1518
9D0I|1|1A|G|1519
9D0I|1|1A|G|1520
9D0I|1|1A|U|1523

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains