IL_9D0I_159

3D structure

PDB id

9D0I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Se-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

GAUG*CUAAUC

Length

10 nucleotides

Bulged bases

9D0I|1|1a|U|1257, 9D0I|1|1a|A|1280, 9D0I|1|1a|U|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9D0I|1|1a|G|1255
9D0I|1|1a|A|1256
9D0I|1|1a|U|1257
9D0I|1|1a|G|1258
*
9D0I|1|1a|C|1277
9D0I|1|1a|U|1278
9D0I|1|1a|A|1279
9D0I|1|1a|A|1280
9D0I|1|1a|U|1281
9D0I|1|1a|C|1282

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1c

30S ribosomal protein S3

Chain 1j

30S ribosomal protein S10

Chain 1n

30S ribosomal protein S14 type Z