IL_9D0I_254

3D structure

PDB id

9D0I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Se-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

GGAGCCUGUGAAC*GGGAGGCGCCGGUGAAAUAC

Length

33 nucleotides

Bulged bases

9D0I|1|2A|U|2132, 9D0I|1|2A|G|2168

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9D0I|1|2A|G|2124
9D0I|1|2A|G|2125
9D0I|1|2A|A|2126
9D0I|1|2A|G|2127
9D0I|1|2A|C|2128
9D0I|1|2A|C|2129
9D0I|1|2A|U|2130
9D0I|1|2A|G|2131
9D0I|1|2A|U|2132
9D0I|1|2A|G|2133
9D0I|1|2A|A|2134
9D0I|1|2A|A|2135
9D0I|1|2A|C|2136
*
9D0I|1|2A|G|2155
9D0I|1|2A|G|2156
9D0I|1|2A|G|2157
9D0I|1|2A|A|2158
9D0I|1|2A|G|2159
9D0I|1|2A|G|2160
9D0I|1|2A|C|2161
9D0I|1|2A|G|2162
9D0I|1|2A|C|2163
9D0I|1|2A|C|2164
9D0I|1|2A|G|2165
9D0I|1|2A|G|2166
9D0I|1|2A|U|2167
9D0I|1|2A|G|2168
9D0I|1|2A|A|2169
9D0I|1|2A|A|2170
9D0I|1|2A|A|2171
9D0I|1|2A|U|2172
9D0I|1|2A|A|2173
9D0I|1|2A|C|2174

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2y

Transfer RNA; tRNA