IL_9D0J_024
3D structure
- PDB id
- 9D0J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with BT-33, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- CGCUGAC*GGUGGAG
- Length
- 14 nucleotides
- Bulged bases
- 9D0J|1|1A|G|932
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9D0J_024 not in the Motif Atlas
- Geometric match to IL_8VTW_349
- Geometric discrepancy: 0.028
- The information below is about IL_8VTW_349
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_48600.1
- Basepair signature
- cWW-L-cWW-cWW-R-L-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
9D0J|1|1A|C|844
9D0J|1|1A|G|845
9D0J|1|1A|C|846
9D0J|1|1A|U|847
9D0J|1|1A|G|848
9D0J|1|1A|A|849
9D0J|1|1A|C|850
*
9D0J|1|1A|G|927
9D0J|1|1A|G|928
9D0J|1|1A|U|930
9D0J|1|1A|G|931
9D0J|1|1A|G|932
9D0J|1|1A|A|933
9D0J|1|1A|G|934
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 13
- 50S ribosomal protein L30
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