IL_9D0J_186

3D structure

PDB id

9D0J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with BT-33, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAGC

Length

18 nucleotides

Bulged bases

9D0J|1|2A|U|504, 9D0J|1|2A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D0J_186 not in the Motif Atlas

Geometric match to IL_8VTW_013

Geometric discrepancy: 0.0388

The information below is about IL_8VTW_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.7

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

9D0J|1|2A|G|481
9D0J|1|2A|A|482
9D0J|1|2A|A|483
9D0J|1|2A|C|484
*
9D0J|1|2A|G|496
9D0J|1|2A|A|497
9D0J|1|2A|G|498
9D0J|1|2A|U|499
9D0J|1|2A|G|500
9D0J|1|2A|A|501
9D0J|1|2A|A|502
9D0J|1|2A|A|503
9D0J|1|2A|U|504
9D0J|1|2A|A|505
9D0J|1|2A|G|506
9D0J|1|2A|A|507
9D0J|1|2A|G|508
9D0J|1|2A|C|509

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2W

50S ribosomal protein L22

Chain 2Y

50S ribosomal protein L24