IL_9D0J_233

3D structure

PDB id

9D0J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with BT-33, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

9D0J|1|2A|C|1543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D0J_233 not in the Motif Atlas

Homologous match to IL_9DFE_062

Geometric discrepancy: 0.0879

The information below is about IL_9DFE_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25943.1

Basepair signature

cWW-tWH-tHH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9D0J|1|2A|G|1526
9D0J|1|2A|G|1527
9D0J|1|2A|A|1528
9D0J|1|2A|A|1528|||A
9D0J|1|2A|G|1529
*
9D0J|1|2A|U|1540
9D0J|1|2A|G|1541
9D0J|1|2A|A|1542
9D0J|1|2A|C|1543
9D0J|1|2A|A|1544
9D0J|1|2A|A|1545
9D0J|1|2A|C|1546

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains