IL_9D0J_257

3D structure

PDB id

9D0J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with BT-33, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GGAGCCUGUGAAC*GGGAGGCGCCGGUGAAAUAC

Length

33 nucleotides

Bulged bases

9D0J|1|2A|U|2132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9D0J|1|2A|G|2124
9D0J|1|2A|G|2125
9D0J|1|2A|A|2126
9D0J|1|2A|G|2127
9D0J|1|2A|C|2128
9D0J|1|2A|C|2129
9D0J|1|2A|U|2130
9D0J|1|2A|G|2131
9D0J|1|2A|U|2132
9D0J|1|2A|G|2133
9D0J|1|2A|A|2134
9D0J|1|2A|A|2135
9D0J|1|2A|C|2136
*
9D0J|1|2A|G|2155
9D0J|1|2A|G|2156
9D0J|1|2A|G|2157
9D0J|1|2A|A|2158
9D0J|1|2A|G|2159
9D0J|1|2A|G|2160
9D0J|1|2A|C|2161
9D0J|1|2A|G|2162
9D0J|1|2A|C|2163
9D0J|1|2A|C|2164
9D0J|1|2A|G|2165
9D0J|1|2A|G|2166
9D0J|1|2A|U|2167
9D0J|1|2A|G|2168
9D0J|1|2A|A|2169
9D0J|1|2A|A|2170
9D0J|1|2A|A|2171
9D0J|1|2A|U|2172
9D0J|1|2A|A|2173
9D0J|1|2A|C|2174

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2y

Transfer RNA; tRNA