IL_9D0J_315

3D structure

PDB id

9D0J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with BT-33, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

9D0J|1|2a|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D0J_315 not in the Motif Atlas

Homologous match to IL_6CZR_143

Geometric discrepancy: 0.1304

The information below is about IL_6CZR_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37722.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

2

Unit IDs

9D0J|1|2a|G|683
9D0J|1|2a|A|684
9D0J|1|2a|G|685
9D0J|1|2a|U|686
9D0J|1|2a|A|687
9D0J|1|2a|G|688
*
9D0J|1|2a|C|699
9D0J|1|2a|G|700
9D0J|1|2a|C|701
9D0J|1|2a|A|702
9D0J|1|2a|G|703
9D0J|1|2a|A|704
9D0J|1|2a|U|705
9D0J|1|2a|A|706
9D0J|1|2a|C|707

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2k

30S ribosomal protein S11