IL_9D0J_322

3D structure

PDB id

9D0J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with BT-33, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D0J_322 not in the Motif Atlas

Homologous match to IL_6CZR_150

Geometric discrepancy: 0.1836

The information below is about IL_6CZR_150

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9D0J|1|2a|G|953
9D0J|1|2a|G|954
*
9D0J|1|2a|C|1226
9D0J|1|2a|A|1227
9D0J|1|2a|C|1228

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2m

30S ribosomal protein S13

Chain 2s

30S ribosomal protein S19

Chain 2w

Transfer RNA; tRNA

Chain 2x

Transfer RNA; tRNA