IL_9D5J_002

3D structure

PDB id

9D5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human Adenosine Deaminase Acting on dsRNA (ADAR2-RD) bound to dsRNA containing deoxyinosine at the -1 position of the guide strand

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAG*CCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

9D5J|1|C|G|14
9D5J|1|C|A|15
9D5J|1|C|G|16
*
9D5J|1|D|C|17
9D5J|1|D|C|18
9D5J|1|D|C|19

Current chains

Chain C

RNA Top Strand Containing 8-azanebularine (8AZ)

Chain D

RNA Bottom Strand containing deoxyinosine complementary to a guanosine adjacent to the target site

Nearby chains

Chain A

Isoform 4 of Double-stranded RNA-specific editase 1

Chain B

Isoform 4 of Double-stranded RNA-specific editase 1