IL_9D5K_001
3D structure
- PDB id
- 9D5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human Adenosine Deaminase Acting on dsRNA (ADAR2-RD) bound to dsRNA containing an expanded cytidine analog at the -1 position of the guide strand
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.697 Å
Loop
- Sequence
- CG(8AZ)G*CC(A1BBA)G
- Length
- 8 nucleotides
- Bulged bases
- 9D5K|1|C|8AZ|13, 9D5K|1|D|A1BBA|21
- QA status
- Modified nucleotides: 8AZ, A1BBA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9D5K_001 not in the Motif Atlas
- Geometric match to IL_8E4X_002
- Geometric discrepancy: 0.3548
- The information below is about IL_8E4X_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_09990.2
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
9D5K|1|C|C|11
9D5K|1|C|G|12
9D5K|1|C|8AZ|13
9D5K|1|C|G|14
*
9D5K|1|D|C|19
9D5K|1|D|C|20
9D5K|1|D|A1BBA|21
9D5K|1|D|G|22
Current chains
- Chain C
- RNA Top Strand
- Chain D
- RNA Bottom Strand
Nearby chains
- Chain A
- Isoform 4 of Double-stranded RNA-specific editase 1
- Chain B
- Isoform 4 of Double-stranded RNA-specific editase 1
Coloring options: